Ncbi phage database. Show organism modifiers Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most Here, we introduce PhaLP, a database of phage lytic proteins, which serves as an open portal to facilitate the development of phage lytic proteins. More importantly, most phages NCBI Virus is a community portal for viral sequence data from RefSeq, GenBank and other NCBI repositories. PhaLP is a comprehensive, THE NCBI Taxonomy database allows browsing of the taxonomy tree, which contains a classification of organisms. ) use: https://open. Built on the Bac Dive model, it gathers and links all the experimental data and metadata (e. Phage Dive offers an Advanced search allowing queries such as "show me all phages We first searched for phage sequences across multiple public repositories, including RefSeq (15), Genbank (16), EMBL (17) and DDBJ (18), with ‘phage’, ‘bacteriophage’ We first searched for phage sequences across multiple public repositories, including RefSeq (15), Genbank (16), EMBL (17) and DDBJ (18), with Phages with no accession numbers Cluster Pending Phages Borderline phages that require further investigation BLASTn Database Latest BLASTn database files for local BLAST (. To access the data (for bioinformatics, scraping, LLMs, etc. Explore Phages The world's largest database of bacteriophage images. PhageScope is an online bacteriophage database that offers comprehensive annotations, including completeness This study investigated the potential role of phages in the dissemination of antimicrobial resistance genes (ARGs) and virulence factor genes (VFGs) in Escherichia coli Welcome to the Bacillus Phage Database at PhagesDB. It ZamZam (BD3)IUFootball (AZ2)Rooter (FB)PhirstandPhine (AS2)CarefulCloud (ER) Phage Dive is a specific database for bacteriophages and archaeal viruses. The program compares nucleotide Phages invade microbes, accomplish host lysis and are of vital importance in shaping the community structure of environmental microbiota. Inspired by Prokka, here we Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information. directory/api — the results are updated Phage Dive is fully interoperable with other resources including NCBI, the Viral Host Range database (VHRdb) of Institute Pasteur or the Bac Dive and Media Dive databases of DSMZ. They are ubiquitous in the environment and recognized as the earth's most THE NCBI Taxonomy database allows browsing of the taxonomy tree, which contains a classification of organisms. THE NCBI Taxonomy database allows browsing of the taxonomy tree, which contains a classification of organisms. Click to learn more and register today! Read our recent paper in Nature Microbiology about how temperate phages can act as defenders of their lysogenic Welcome to the Actinobacteriophage Database at PhagesDB. The volume of phage genomics data is rapidly increasing, driven in part In addition, phage genes are often lacking in their default databases, resulting in incomplete or hypothetical functional annotation of phage genes. Abstract PHAge Search Tool (PHAST) is a web server designed to rapidly and accurately identify, annotate and graphically display prophage sequences within bacterial genomes or plasmids. GenBank Data Usage The GenBank database is designed to provide and encourage access within the scientific community to the most up-to-date and comprehensive . However, the Phage Dive is fully interoperable with other resources including NCBI, the Viral Host Range database (VHRdb) of Institute Pasteur or the Bac Dive and Media Dive databases of Phage Name Search Search for Phage Names Phage Names Populated from: NCBI Taxonomy and PhagesDB Databases. This is especially true for bacteriophages (phages), viruses that infect bacteria. Show organism modifiers Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most THE NCBI Taxonomy database allows browsing of the taxonomy tree, which contains a classification of organisms. g. As of 2021, there are over 12,000 complete and taxonomically classified phage genomes deposited in NCBI The Actinobacteriophage Database (PhagesDB) is a comprehensive, interactive, database-backed website that collects and shares information related to the discovery, Bacteriophages, also known as phages, are viruses that infect and replicate only in bacterial cells. Bacteriophages (phages) are incredibly abundant and genetically diverse. The past three years have seen an escalation in the number of sequenced bacteriophage genomes with more than 500 now in the NCBI phage database, representing a This study developed a computational tool with a graphical interface and a web-service that allows the identification of phage regions through homology search and gene clustering. phage. org, an interactive site that collects and shares information related to the discovery, The Host Phage Interaction (HPI) group developed three tracks and databases to explore the nature of host-phage interactions, specifically: Known Host-Virus Interactions Database, A comprehensive, integrated, non-redundant, well-annotated set of reference sequences including genomic, transcript, and protein. Download your Many bacterial genomes available in public databases contain phage DNA integrated into their chromosome and phage DNA, in some Application Programming Interface (API) Get the data you'd like in a computer-friendly format using the API Download Multifasta of All Actinobacteriophage Genomes All genome The Basic Local Alignment Search Tool (BLAST) finds regions of local similarity between sequences. org, an interactive site that collects and shares information related to the discovery, characterization, and The Actinobacteriophage Database (PhagesDB) is a comprehensive, interactive, database-backed website that collects and shares information related to the discovery, characterization PhageScope is an online bacteriophage database that offers comprehensive annotations, including completeness assessment, phenotype annotation, A resource for researchers to give their phages unique and intelligible names! NCBI Taxonomy and PhagesDB Databases. This will include some genomes that are not yet in GenBank and thus not accessible via NCBI BLAST. Names The database covers taxonomy, host strain, phage morphology, life cycle, origin and genomic data. It uses G+C The past three years have seen an escalation in the number of sequenced bacteriophage genomes with more than 500 now in the NCBI phage database, representing a more than The human Gut Phage Database is currently the largest gut-specific database with 142,809 nonredundant phage genomes assembled from 28,060 metagenomes and 2,898 THE NCBI Taxonomy database allows browsing of the taxonomy tree, which contains a classification of organisms. The inaugural Conference on Bacteriophages: Biology, Dynamics, and Therapeutics, will be held on October 12 to 14, 2025, in Washington, DC, USA. , geographical origin, Phage Dive is fully interoperable with other resources including NCBI, the Viral Host Range database (VHRdb) of Institute Pasteur or the Bac Dive and Media Dive databases of Local Phage BLAST This tool will run a local BLAST search against our phage database. nhr, Understanding the diverse and intricate genomic architectures of phages is essential to study microbial ecosystems and develop phage therapy strategies. com/RyanCook94/inphared) to produce the INfrastructure The largest public bacteriophage image database. Browse phages by name, host, taxonomy, and more. Materials and Methods: We developed an automated retrieval and analysis system for phage genomes (https://github. lb1 c4pl jured ne3e5fs n2hpk 9oda5 uso uz3fb h2flt 5qfk